PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g19790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 163aa    MW: 18450.4 Da    PI: 7.4297
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g19790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001679101323
                 ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                 C+   Cgk+F +   L++H   H
  CA03g19790  79 CSyeGCGKTFIDAGALRKHSHIH 101
                 77779**************8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-1472102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
SMARTSM003550.003277101IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.3E-678102No hitNo description
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-5103116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MESQITHHLY ERRPIYKSKA PATKWFKEWV PQDVVATGGK CSLLKWVNEA TLKGLKEKPK  60
EPGVPVPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKVRVYC  120
LCIGTALYAL ELQDELDYSI ILILPSIFTY YFAFMTLSSG LW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176941e-122AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564400.14e-80PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L36e-46Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLM1AIE22e-71M1AIE2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000234595e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.18e-40C2H2 family protein